PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016453253.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 423aa    MW: 45965.6 Da    PI: 7.0643
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016453253.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.57e-36361542118
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssasn 84 
                     +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++            s s+a+ ++ e+++s+++ 
  XP_016453253.1  36 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELpawkptlgsgsiSVSAANTSNLEQDQSQDE- 129
                     79**************************************************************666666655444222222221111111111. PP

             TCP  85 sssg...................kaaksaakskksqksaasalnlakesraka 118
                        +                   +                         +++a
  XP_016453253.1 130 ---NftfhqenattsffdnaagpS-------------------------NKRA 154
                     ...012222223333333333331.........................1111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3136143IPR005333Transcription factor, TCP
PROSITE profilePS5136934.5433896IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGDSQHQNHR TTSRLGLRST VGEIVEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA  60
HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK PAIDELAELP AWKPTLGSGS ISVSAANTSN  120
LEQDQSQDEN FTFHQENATT SFFDNAAGPS NKRAMTTLRN ETNTSGSFLP PSLESDAIAD  180
TIKSFFPMGS STATNSSAMQ FQSFQEHNLL SRTSSHSQDL RLSLQSFQDP ILLHHQNQQA  240
HHTEQEQTHF QASNFFTGST PFGFDASGWS VSEHQQQPVE LGRVQRLAAA RAGRDSTGLA  300
LCGGAVAGAA GGYLFNSPPA PPLLQQLFGQ NQFFSQRGPL QSSYSPSIRA WIDPSAIAIA  360
TADPIHHHQA VLPMYSTSIS GIGFASELGG FSGFRIPARI QGEIEEHDGI SDKPSSASSD  420
SRH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2108761e-107HM210876.1 Solanum melongena lanceolate gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453253.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR51e-106TCP4_ARATH; Transcription factor TCP4
TrEMBLE2FYM10.0E2FYM1_CAPAN; Lanceolate
TrEMBLM4PM760.0M4PM76_9SOLA; TCP trancription factor
STRINGPGSC0003DMT4000322680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-94TCP family protein